2016_Khan_etal_BPJ
has assertion: assertion
has provenance: provenance
has publication info: pubinfo
type: Nanopublication
created: 2026-03-03T16:15:11.234+01:00
creator: RoCrateBot
type: RoCrateNanopub

Environmental research
type: DefinedTerm

Life sciences
type: DefinedTerm

Physical sciences
type: DefinedTerm

Biology
type: DefinedTerm

file
type: Lemma
norm score: 23.93822393822394
score: 12.4

email
type: Concept
norm score: 10.315789473684212
score: 9.8

directory
type: Lemma
norm score: 20.07722007722008
score: 10.4

earth sciences
type: FieldOfResearch
norm score: 100.0
score: 0.6105480790138245

simulation
type: Lemma
norm score: 11.776061776061777
score: 6.1

All the input/analysis files are present in corresponding directories/sub-directories.
type: Sentence
norm score: 25.05399568034557
score: 11.6

file
type: Concept
norm score: 25.578947368421048
score: 24.299999999999997

scr directory
type: Phrase
norm score: 14.247311827956988
score: 10.6

manuscript
type: Concept
norm score: 7.7894736842105265
score: 7.4

continuum electrostatics calculation
type: Phrase
norm score: 15.86021505376344
score: 11.8

calculation
type: Lemma
norm score: 13.513513513513514
score: 7.0

manuscript file
type: Phrase
norm score: 30.779569892473116
score: 22.9

raw data
type: Concept
norm score: 4.526315789473684
score: 4.3

directory
type: Concept
norm score: 12.0
score: 11.4

analysis file
type: Phrase
norm score: 21.63978494623656
score: 16.1

hypertext
type: Concept
norm score: 3.789473684210526
score: 3.6

email
type: Lemma
norm score: 17.953667953667956
score: 9.3

electrostatics
type: Concept
norm score: 3.5789473684210527
score: 3.4

As for the manuscript files, the first version is in the "BtPIPLC_for_BPJ". The "BPJ_reply_for_appeal" directory should have all the later submission files.
type: Sentence
norm score: 35.85313174946005
score: 16.6

simulation
type: Concept
norm score: 7.157894736842105
score: 6.8

computer operations and hardware
type: NASA
norm score: 100.0
score: 0.8506443500518799

calculation
type: Concept
norm score: 7.684210526315789
score: 7.3

service-account-enrichment
type: Agent

2016_Khan_etal_BPJ
about: Environmental research
about: Life sciences
about: Physical sciences
about: Biology
content size: 8982
date created: 2022-03-22 02:02:04.214260+00:00
date modified: 2025-03-05 00:45:29.408393+00:00
date published: 2022-03-22 02:02:04.214260+00:00
description: Files are seperated based on MD simulations and continuum electrostatics calculations. All the input/analysis files are present in corresponding directories/sub-directories. If you have trouble navigating, please send email to LINK: mailto:reza.611@gmail.com. ### Some raw trajectories are not removed as I have to repeatedly use them for others. # For the simulations and/or calculations please go to the "simulations_analyses/" directory, which is divided into two groups: "MD_simulations/" and "continuum_electrostatics/". All the subfolder has long names to distinguish the content of the folder (i.e. pi_plc_dmpg_100_1st_run/). All the necessary scripts are also present in the scr directory or other subdirectories. If you have trouble finding any file, please send email to LINK: mailto:reza.611@gmail.com. # For the manuscript files, please go to the "Manuscript_files_figures_raw_data/" directory. If you unzip the "Files_for_archive_Orinoco_BPJ_2016" folder and enter, you will get all the plots and raw data in the "Redo_data_and_plots_23_04_2015". This should be the final version. If you want to track the source of the raw data, please go to the "simulations_analyses/" directory. The folders for figures are named according to the content of the figure rather than Figure_1/Figure_2, as they change their places often in a manuscript. This was for my easiness of keeping track. As for the manuscript files, the first version is in the "BtPIPLC_for_BPJ". The "BPJ_reply_for_appeal" directory should have all the later submission files. Please do not hesitate to send an email in case of any questions. If you see any error please do let me know.
encoding format: application/ld+json
license: no-permission
creation mode: MANUAL
type: ResearchObject
type: LiveRO
type: Dataset
type: DataResearchObject
domain: operating systems
domain: e-mail
concept: email
concept: file
concept: manuscript
concept: raw data
concept: directory
concept: hypertext
concept: electrostatics
concept: simulation
concept: calculation
concept: trajectory
concept: folder
concept: mailto
concept: submission
field of research: earth sciences
field of research: atmospheric sciences
IPTC: IT-computer sciences
IPTC: Newspaper
lemma: file
lemma: directory
lemma: simulation
lemma: calculation
lemma: email
lemma: manuscript
NASA: computer operations and hardware
NASA: mathematical and computer sciences
phrase: scr directory
phrase: continuum electrostatics calculation
phrase: manuscript file
phrase: analysis file
phrase: submission file
sentence: All the input/analysis files are present in corresponding directories/sub-directories.
sentence: As for the manuscript files, the first version is in the "BtPIPLC_for_BPJ". The "BPJ_reply_for_appeal" directory should have all the later submission files.
sentence: Files are seperated based on MD simulations and continuum electrostatics calculations.
cite-as: Nathalie Reuter. "2016_Khan_etal_BPJ." ROHub. Mar 22 ,2022. https://w3id.org/ro-id/8c5d4e1e-23d9-44e7-8925-a0ce2504e6e5.

data
type: Folder
type: Dataset

metadata
type: Folder
type: Dataset

raw data
type: Folder
type: Dataset

biblio
type: Folder
type: Dataset

https://w3id.org/ro-id/8c5d4e1e-23d9-44e7-8925-a0ce2504e6e5/resources/07e45579-edb2-492d-ba8a-875903e0aac0
date created: 2022-03-22 02:02:18.667122+00:00
date modified: 2022-03-22 02:02:18.999746+00:00
license: no-permission
name: https://doi.org/10.1016/j.bpj.2016.02.020
sd date published: 2022-03-22 02:02:18.667122+00:00
type: BibliographicResource
type: Resource
type: MediaObject

2016_Khan_etal_BPJ
bibliographic citation: Reuter, N. (2022).2016_Khan_etal_BPJ [Data set]. Norstore. https://doi.org/10.11582/2022.00010
rights holder: Nathalie Reuter
type: Simulation
date created: 2022-02-15 00:00:00
date modified: 2022-03-22 02:02:23.355923+00:00
description: Files are seperated based on MD simulations and continuum electrostatics calculations. All the input/analysis files are present in corresponding directories/sub-directories. If you have trouble navigating, please send email to LINK. ### Some raw trajectories are not removed as I have to repeatedly use them for others. # For the simulations and/or calculations please go to the "simulations_analyses/" directory, which is divided into two groups: "MD_simulations/" and "continuum_electrostatics/". All the subfolder has long names to distinguish the content of the folder (i.e. pi_plc_dmpg_100_1st_run/). All the necessary scripts are also present in the scr directory or other subdirectories. If you have trouble finding any file, please send email to LINK. # For the manuscript files, please go to the "Manuscript_files_figures_raw_data/" directory. If you unzip the "Files_for_archive_Orinoco_BPJ_2016" folder and enter, you will get all the plots and raw data in the "Redo_data_and_plots_23_04_2015". This should be the final version. If you want to track the source of the raw data, please go to the "simulations_analyses/" directory. The folders for figures are named according to the content of the figure rather than Figure_1/Figure_2, as they change their places often in a manuscript. This was for my easiness of keeping track. As for the manuscript files, the first version is in the "BtPIPLC_for_BPJ". The "BPJ_reply_for_appeal" directory should have all the later submission files. Please do not hesitate to send an email in case of any questions. If you see any error please do let me know.
license: no-permission
sd date published: 2022-02-15 00:00:00
type: Dataset
type: Resource
type: MediaObject
maintainer: Nathalie Reuter

trajectory
type: Concept
norm score: 3.263157894736842
score: 3.1

atmospheric sciences
type: FieldOfResearch
norm score: 100.0
score: 0.6105480790138245

folder
type: Concept
norm score: 5.052631578947368
score: 4.8

IT-computer sciences
type: IPTC
path: Science and technology/Technology and engineering/IT-computer sciences

Newspaper
type: IPTC
path: Arts, culture and entertainment/Mass media/Newspaper

mailto
type: Concept
norm score: 5.578947368421052
score: 5.3

manuscript
type: Lemma
norm score: 12.741312741312742
score: 6.6

operating systems
type: Domain
norm score: 32.352941176470594
score: 1.1

e-mail
type: Domain
norm score: 67.6470588235294
score: 2.3

mathematical and computer sciences
type: NASA
norm score: 100.0
score: 0.8506443500518799

Files are seperated based on MD simulations and continuum electrostatics calculations.
type: Sentence
norm score: 39.09287257019439
score: 18.1

submission
type: Concept
norm score: 3.6842105263157894
score: 3.5

submission file
type: Phrase
norm score: 17.473118279569892
score: 13.0

Geo H.
type: Agent

Nathalie Reuter
type: Agent

sig
has algorithm: RSA
signed by: RoCrateBot