Galaxy EODIE Tool Example
has assertion: assertion
has provenance: provenance
has publication info: pubinfo
type: Nanopublication
created: 2026-03-03T16:19:13.371+01:00
creator: RoCrateBot
type: RoCrateNanopub

Applied sciences
type: DefinedTerm

Earth observation
type: DefinedTerm

Anne Fouilloux
affiliation: Simula Research Laboratory
type: Agent
orcid: 0000-0002-1784-2920

Samantha Wittke
affiliation: CSC - IT Center for Science (Finland)
type: Agent
orcid: 0000-0002-9625-7235

University of Oslo
type: Organization
type: Agent

Finnish Geospatial Research Institute
type: Organization
type: Agent

POLYGON ((24.18964452411491 61.191826100745374, 24.196058374024226 61.192475014763325, 24.196205529001745 61.19179482361619, 24.19026064542983 61.19107198695369, 24.18964452411491 61.191826100745374))
polygon: 24.18964452411491 61.191826100745374, 24.196058374024226 61.192475014763325, 24.196205529001745 61.19179482361619, 24.19026064542983 61.19107198695369, 24.18964452411491 61.191826100745374
type: GeoShape

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/#3c5b99ce-3f92-44eb-bc51-01817ec7ef0d
name: POLYGON ((24.18406744995054 61.18989752053165, 24.18674075775491 61.19037141598483, 24.18716156079448 61.18986424310414, 24.185956130552082 61.18912805997288, 24.18430110034565 61.188898431974906, 24.18406744995054 61.18989752053165))
polygon: 24.18406744995054 61.18989752053165, 24.18674075775491 61.19037141598483, 24.18716156079448 61.18986424310414, 24.185956130552082 61.18912805997288, 24.18430110034565 61.188898431974906, 24.18406744995054 61.18989752053165
type: GeoShape

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/#40deabf0-d681-4502-9597-5c3cf95ba568
name: POLYGON ((22.811822629936163 60.294519011902665, 24.91411237826359 60.294519011902665, 24.91411237826359 61.32117938698947, 22.811822629936163 61.32117938698947, 22.811822629936163 60.294519011902665))
type: Place

POLYGON ((24.192215188374867 61.18501915071051, 24.19578893147163 61.186083237631095, 24.19715287272243 61.184061770037154, 24.19399282834134 61.18289474417407, 24.192215188374867 61.18501915071051))
type: Place

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/#a3f73c0b-f4ae-4a22-bf0c-8a7c8c910ad9
name: POLYGON ((22.811822629936163 60.294519011902665, 24.91411237826359 60.294519011902665, 24.91411237826359 61.32117938698947, 22.811822629936163 61.32117938698947, 22.811822629936163 60.294519011902665))
polygon: 22.811822629936163 60.294519011902665, 24.91411237826359 60.294519011902665, 24.91411237826359 61.32117938698947, 22.811822629936163 61.32117938698947, 22.811822629936163 60.294519011902665
type: GeoShape

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/#ce674988-05db-4af3-9a7b-2511e34e31a2
name: POLYGON ((24.18406744995054 61.18989752053165, 24.18674075775491 61.19037141598483, 24.18716156079448 61.18986424310414, 24.185956130552082 61.18912805997288, 24.18430110034565 61.188898431974906, 24.18406744995054 61.18989752053165))
type: Place

POLYGON ((24.18964452411491 61.191826100745374, 24.196058374024226 61.192475014763325, 24.196205529001745 61.19179482361619, 24.19026064542983 61.19107198695369, 24.18964452411491 61.191826100745374))
type: Place

service-account-enrichment
type: Agent

POLYGON ((24.192215188374867 61.18501915071051, 24.19578893147163 61.186083237631095, 24.19715287272243 61.184061770037154, 24.19399282834134 61.18289474417407, 24.192215188374867 61.18501915071051))
polygon: 24.192215188374867 61.18501915071051, 24.19578893147163 61.186083237631095, 24.19715287272243 61.184061770037154, 24.19399282834134 61.18289474417407, 24.192215188374867 61.18501915071051
type: GeoShape

Galaxy EODIE Tool Example
has snapshot: https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272
about: Applied sciences
about: Earth observation
author: Anne Fouilloux
content size: 244354
contributor: Samantha Wittke
copyright holder: Finnish Geospatial Research Institute
date created: 2022-03-11 10:09:34.280134+00:00
date modified: 2025-03-05 00:59:10.075183+00:00
date published: 2022-03-11 10:09:34.280134+00:00
description: This Research Object aggregates all the resources needed for running Galaxy EODIE: i) Examples of input datasets needed for running EODIE on Galaxy; ii) Galaxy Workflow (.ga) and corresponding CWL abstract and diagram; iii) Link to a published Galaxy history.
encoding format: application/ld+json
license: no-permission
publisher: University of Oslo
publisher: Finnish Geospatial Research Institute
creation mode: MANUAL
concept: Einet Galaxy
concept: abstraction
concept: dataset
concept: diagram
concept: example
concept: input
concept: resource
field of research: earth sciences
IPTC: IT-computer sciences
IPTC: Wireless technology
lemma: EODIE
lemma: Einet Galaxy
lemma: Galaxy EODIE
lemma: Galaxy Workflow
lemma: Research Object
lemma: example
lemma: resource
NASA: mathematical and computer sciences
phrase: CWL abstract
phrase: EODIE on Galaxy
phrase: Galaxy EODIE tool example
phrase: Galaxy history
phrase: input dataset
sentence: Galaxy EODIE Tool Example.
sentence: This Research Object aggregates all the resources needed for running Galaxy EODIE: i) Examples of input datasets needed for running EODIE on Galaxy; ii) Galaxy Workflow (ga) and corresponding CWL abstract and diagram; iii) Link to a published Galaxy history.
has geometry: https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/19e8c40b-3247-4262-beb1-023d73cd3ac0
has geometry: https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/26eb3f89-d160-4b0c-a5d9-e1da72c0cb68
has geometry: https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/38f18eb0-32db-4096-ab87-65d06506b13e
has geometry: https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/b2f4e417-3edc-4c7d-92e4-add7e54622f0
type: ResearchObject
type: LiveRO
type: Dataset
type: earth-scienceExecutableResearchObject
type: ExecutableResearchObject
domain: database
domain: mechanics
cite-as: Fouilloux, Anne, and Samantha Wittke. "Galaxy EODIE Tool Example." ROHub. Mar 11 ,2022. https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b.

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/19e8c40b-3247-4262-beb1-023d73cd3ac0
as WKT: POLYGON ((24.18406744995054 61.18989752053165, 24.18674075775491 61.19037141598483, 24.18716156079448 61.18986424310414, 24.185956130552082 61.18912805997288, 24.18430110034565 61.188898431974906, 24.18406744995054 61.18989752053165))
type: Geometry
type: Polygon

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/26eb3f89-d160-4b0c-a5d9-e1da72c0cb68
as WKT: POLYGON ((22.811822629936163 60.294519011902665, 24.91411237826359 60.294519011902665, 24.91411237826359 61.32117938698947, 22.811822629936163 61.32117938698947, 22.811822629936163 60.294519011902665))
type: Geometry
type: Polygon

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/38f18eb0-32db-4096-ab87-65d06506b13e
as WKT: POLYGON ((24.192215188374867 61.18501915071051, 24.19578893147163 61.186083237631095, 24.19715287272243 61.184061770037154, 24.19399282834134 61.18289474417407, 24.192215188374867 61.18501915071051))
type: Geometry
type: Polygon

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/b2f4e417-3edc-4c7d-92e4-add7e54622f0
as WKT: POLYGON ((24.18964452411491 61.191826100745374, 24.196058374024226 61.192475014763325, 24.196205529001745 61.19179482361619, 24.19026064542983 61.19107198695369, 24.18964452411491 61.191826100745374))
type: Geometry
type: Polygon

tool
type: Folder
type: Dataset

input
type: Folder
type: Dataset

biblio
type: Folder
type: Dataset

output
type: Folder
type: Dataset

Jupyter Notebook to update Research Object and visualize area of interest
author: Anne Fouilloux
content size: 394610
creator: Anne Fouilloux
date created: 2022-03-12 15:14:03.275057+00:00
date modified: 2022-03-12 15:14:08.352355+00:00
description: This Python Jupyter Notebook load this Research Object, update it e.g. add additional metadata information and fill its content. It also show the area of interest by visualizing the Sentinel-2 tile and the parccel shapefile where NDVI is calculated with EODIE Galaxy Tool.
license: no-permission
sd date published: 2022-03-12 15:14:03.275057+00:00
type: Resource
type: MediaObject
type: earth-scienceJupyterNotebook

test_parcels_32635
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 12:49:24.260353+00:00
date modified: 2022-03-11 12:49:24.592855+00:00
description: This input dataset is a shapefile corresponding the the area of interest e.g. on which statistics such as NDVI will be computed.
license: no-permission
sd date published: 2022-03-11 12:49:24.260353+00:00
type: Dataset
type: Resource
type: MediaObject

Galaxy Workflow for EODIE Galaxy Tool
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 12:38:11.563886+00:00
date modified: 2022-03-11 12:38:11.903986+00:00
description: This is a link to Workflow Research Object stored in workflowhub.eu. It contains a Galaxy workflow (.ga), abstract CWL (.cwl) and diagram (.png).
license: no-permission
sd date published: 2022-03-11 12:38:11.563886+00:00
type: Workflow
type: Resource
type: MediaObject

Abstract CWL figure for EODIE Galaxy Tool
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 12:44:21.317999+00:00
date modified: 2022-03-11 12:44:21.651010+00:00
description: Abstract CWL Automatically generated from the Galaxy workflow file: Workflow constructed from history 'EODIE Sentinel'
license: no-permission
sd date published: 2022-03-11 12:44:21.317999+00:00
type: Sketch
type: Resource
type: MediaObject

logfile
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 12:56:45.981431+00:00
date modified: 2022-03-11 12:56:46.329345+00:00
description: This output is the logfile generated when running EODIE Galaxy Tool over the specified geographical area (test_parcels_32635) and with the input Sentinel-2 dataset.
license: no-permission
sd date published: 2022-03-11 12:56:45.981431+00:00
type: Dataset
type: Resource
type: MediaObject

ndvi_20200626_34VFN_statistics.csv
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 12:54:38.554141+00:00
date modified: 2022-03-11 12:54:38.886339+00:00
description: This output dataset is a csv file containing NDVI values computed over the specific geographical area e.g. given by the input shapefile called 'test_parcels_32635'.
license: no-permission
sd date published: 2022-03-11 12:54:38.554141+00:00
type: Dataset
type: Resource
type: MediaObject

Source code of EODIE version 1.0.2 (zenodo)
doi: 10.5281/zenodo.4762323
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 12:22:30.810417+00:00
date modified: 2022-03-12 14:24:27.459125+00:00
description: Tarball containing the EODIE source code release 1.0.2 and its associated documentation.
license: no-permission
sd date published: 2022-03-11 12:22:30.810417+00:00
type: Resource
type: MediaObject
type: SoftwareSourceCode

sentinel2_tiles_world
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 12:48:40.259848+00:00
date modified: 2022-03-11 12:48:40.576400+00:00
description: This input dataset corresponds to the Sentinel-2 tile shapefile, originally provided by https://fromgistors.blogspot.com/2016/10/how-to-identify-sentinel-2-granule.html,
license: no-permission
sd date published: 2022-03-11 12:48:40.259848+00:00
type: Dataset
type: Resource
type: MediaObject

Galaxy Toolshed for EODIE Galaxy Tool repository
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-12 14:23:32.995366+00:00
date modified: 2022-03-12 14:23:35.080059+00:00
description: Link to the Galaxy Tool shed for EODIE Galaxy Tool repository. This repository is useful whenever you want to install EODIE Galaxy Tool in your own Galaxy instance. The version used in this example is revision: 0:81b0ca76435d
license: no-permission
sd date published: 2022-03-12 14:23:32.995366+00:00
type: Resource
type: MediaObject
type: SoftwareApplication

https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b/resources/ee26fe51-da94-4422-91f5-26e48472665f
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 12:47:07.047116+00:00
date modified: 2022-03-11 12:47:07.360856+00:00
description: Sentinel2 input data. This input dataset corresponds to the data itself while sentinel2_tiles_world would be the corresponding shapefile for the tile.
license: no-permission
sd date published: 2022-03-11 12:47:07.047116+00:00
type: Dataset
type: Resource
type: MediaObject

EODIE documentation
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-11 10:13:54.654033+00:00
date modified: 2022-03-11 10:13:55.031202+00:00
description: Online documentation of EODIE Toolkit.
license: no-permission
sd date published: 2022-03-11 10:13:54.654033+00:00
type: Document
type: Resource
type: MediaObject

Galaxy history EODIE Sentinel
author: Anne Fouilloux
creator: Anne Fouilloux
date created: 2022-03-12 14:27:30.928413+00:00
date modified: 2022-03-12 14:27:32.271476+00:00
description: This Galaxy history contains all the inputs and generated outputs for this EODIE example. If you have an account on Galaxy Europe (if not you can open one), you can import this history and reuse it.
license: no-permission
sd date published: 2022-03-12 14:27:30.928413+00:00
type: ExampleRun
type: Resource
type: MediaObject

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272
is finalized: False
is snapshot of: https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b
snapshoted at time: 2022-03-12 15:16:04.831630+00:00
type: ResearchObject
type: SnapshotRO

Anne Fouilloux
type: Agent

sig
has algorithm: RSA
signed by: RoCrateBot