Nanopublications

@prefix this: <https://w3id.org/np/RAa6EfhEVmz0lPnIE_mddy8bn7Te7gQcGz_wu2ci5cuAs> .
@prefix sub: <https://w3id.org/np/RAa6EfhEVmz0lPnIE_mddy8bn7Te7gQcGz_wu2ci5cuAs/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: np:hasAssertion sub:assertion ;
    np:hasProvenance sub:provenance ;
    np:hasPublicationInfo sub:pubinfo ;
    a np:Nanopublication .
}

sub:assertion {
  <http://edamontology.org/format_2333> rdfs:label "Binary format" .
  <http://edamontology.org/format_3464> rdfs:label "JSON" .
  <http://edamontology.org/format_3508> rdfs:label "PDF" .
  <http://edamontology.org/format_3590> rdfs:label "HDF5" .
  <http://edamontology.org/format_3603> rdfs:label "PNG" .
  <http://edamontology.org/format_3650> rdfs:label "NetCDF" .
  <http://edamontology.org/format_3752> rdfs:label "CSV" .
  <http://edamontology.org/format_3915> rdfs:label "Zarr" .
  <http://edamontology.org/format_3997> rdfs:label "MPEG-4" .
  dct:creator rdfs:label "created by" .
  dct:description rdfs:label "has description" .
  dct:license rdfs:label "has license" .
  dct:title rdfs:label "has title" .
  <http://www.wikidata.org/entity/Q15777> rdfs:label "C" .
  <http://www.wikidata.org/entity/Q206904> rdfs:label "R" .
  <http://www.wikidata.org/entity/Q2407> rdfs:label "C++" .
  <http://www.wikidata.org/entity/Q28865> rdfs:label "Python" .
  <https://codemeta.github.io/terms/hasInputFormat> rdfs:label "expects input format" .
  <https://codemeta.github.io/terms/hasOutputFormat> rdfs:label "produces output format" .
  <https://creativecommons.org/licenses/by/4.0/> rdfs:label "CC-BY-4.0" .
  <https://schema.org/applicationCategory> rdfs:label "serves purpose" .
  <https://schema.org/codeRepository> rdfs:label "has source repository" .
  <https://schema.org/keywords> rdfs:label "has keywords" .
  <https://schema.org/programmingLanguage> rdfs:label "uses programming language" .
  <https://schema.org/url> rdfs:label "is accessible via" .
  <https://spdx.org/licenses/Apache-2.0.html> rdfs:label "Apache 2.0" .
  <https://spdx.org/licenses/BSD-3-Clause.html> rdfs:label "BSD 3 Clause" .
  <https://spdx.org/licenses/GPL-3.0.html> rdfs:label "GPL 3.0" .
  <https://spdx.org/licenses/MIT.html> rdfs:label "MIT" .
  sub:application-category a nt:GuidedChoicePlaceholder ;
    rdfs:label "primary computational purpose" ;
    nt:possibleValuesFromApi "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
  sub:assertion dct:description "Template for describing a Jupyter Notebook as a reusable computational method with semantic metadata for discovery and reuse tracking" ;
    a nt:AssertionTemplate ;
    rdfs:label "Jupyter Notebook Computational Method" ;
    nt:hasNanopubLabelPattern "Method: ${title}" ;
    nt:hasStatement sub:st01 , sub:st02 , sub:st03 , sub:st04 , sub:st05 , sub:st06 , sub:st07 , sub:st08 , sub:st09 , sub:st10 , sub:st11 , sub:st12 , sub:st13 ;
    nt:hasTag "Jupyter Method" ;
    nt:hasTargetNanopubType <https://schema.org/SoftwareSourceCode> .
  sub:creator a nt:UriPlaceholder ;
    rdfs:label "ORCID of creator" ;
    nt:hasPrefix "https://orcid.org/" ;
    nt:hasPrefixLabel "ORCID (just the 16-digit ID)" ;
    nt:hasRegex "0000-\\d{4}-\\d{4}-\\d{4}" .
  sub:description a nt:LongLiteralPlaceholder ;
    rdfs:label "description of what the method does" ;
    nt:hasRegex "[\\s\\S]{10,1000}" .
  sub:executable-url a nt:UriPlaceholder ;
    rdfs:label "direct link to execute this notebook online (e.g. binder)" .
  sub:github-repo a nt:UriPlaceholder ;
    rdfs:label "GitHub repository URL" .
  sub:input-format a nt:RestrictedChoicePlaceholder ;
    rdfs:label "expected input data format" ;
    nt:possibleValue <http://edamontology.org/format_2333> , <http://edamontology.org/format_3464> , <http://edamontology.org/format_3590> , <http://edamontology.org/format_3591> , <http://edamontology.org/format_3620> , <http://edamontology.org/format_3650> , <http://edamontology.org/format_3752> , <http://edamontology.org/format_3915> , <http://edamontology.org/format_3997> .
  sub:keywords a nt:GuidedChoicePlaceholder ;
    rdfs:label "research keywords from Wikidata" ;
    nt:possibleValuesFromApi "https://www.wikidata.org/w/api.php?action=wbsearchentities&language=en&format=json&limit=5&search=" .
  sub:license a nt:RestrictedChoicePlaceholder ;
    rdfs:label "software license" ;
    nt:possibleValue <https://creativecommons.org/licenses/by/4.0/> , <https://spdx.org/licenses/Apache-2.0.html> , <https://spdx.org/licenses/BSD-3-Clause.html> , <https://spdx.org/licenses/GPL-3.0.html> , <https://spdx.org/licenses/MIT.html> .
  sub:notebook a nt:UriPlaceholder ;
    rdfs:label "URI of the Jupyter Notebook method" .
  sub:output-format a nt:RestrictedChoicePlaceholder ;
    rdfs:label "produced output format" ;
    nt:possibleValue <http://edamontology.org/format_2333> , <http://edamontology.org/format_3464> , <http://edamontology.org/format_3508> , <http://edamontology.org/format_3590> , <http://edamontology.org/format_3603> , <http://edamontology.org/format_3650> , <http://edamontology.org/format_3752> , <http://edamontology.org/format_3915> , <http://edamontology.org/format_3997> .
  sub:programming-language a nt:RestrictedChoicePlaceholder ;
    rdfs:label "primary programming language" ;
    nt:possibleValue <http://www.wikidata.org/entity/Q15777> , <http://www.wikidata.org/entity/Q206904> , <http://www.wikidata.org/entity/Q2407> , <http://www.wikidata.org/entity/Q28865> .
  sub:st01 rdf:object <https://schema.org/SoftwareSourceCode> ;
    rdf:predicate rdf:type ;
    rdf:subject sub:notebook .
  sub:st02 rdf:object sub:title ;
    rdf:predicate dct:title ;
    rdf:subject sub:notebook .
  sub:st03 rdf:object sub:description ;
    rdf:predicate dct:description ;
    rdf:subject sub:notebook .
  sub:st04 rdf:object sub:zenodo-doi ;
    rdf:predicate <https://schema.org/url> ;
    rdf:subject sub:notebook .
  sub:st05 rdf:object sub:github-repo ;
    rdf:predicate <https://schema.org/codeRepository> ;
    rdf:subject sub:notebook ;
    a nt:RepeatableStatement .
  sub:st06 rdf:object sub:creator ;
    rdf:predicate dct:creator ;
    rdf:subject sub:notebook ;
    a nt:RepeatableStatement .
  sub:st07 rdf:object sub:programming-language ;
    rdf:predicate <https://schema.org/programmingLanguage> ;
    rdf:subject sub:notebook .
  sub:st08 rdf:object sub:application-category ;
    rdf:predicate <https://schema.org/applicationCategory> ;
    rdf:subject sub:notebook .
  sub:st09 rdf:object sub:keywords ;
    rdf:predicate <https://schema.org/keywords> ;
    rdf:subject sub:notebook ;
    a nt:OptionalStatement , nt:RepeatableStatement .
  sub:st10 rdf:object sub:input-format ;
    rdf:predicate <https://codemeta.github.io/terms/hasInputFormat> ;
    rdf:subject sub:notebook ;
    a nt:OptionalStatement , nt:RepeatableStatement .
  sub:st11 rdf:object sub:output-format ;
    rdf:predicate <https://codemeta.github.io/terms/hasOutputFormat> ;
    rdf:subject sub:notebook ;
    a nt:OptionalStatement , nt:RepeatableStatement .
  sub:st12 rdf:object sub:license ;
    rdf:predicate dct:license ;
    rdf:subject sub:notebook .
  sub:st13 rdf:object sub:executable-url ;
    rdf:predicate <https://schema.org/actionPlatform> ;
    rdf:subject sub:notebook ;
    a nt:OptionalStatement , nt:RepeatableStatement .
  sub:title a nt:LiteralPlaceholder ;
    rdfs:label "title of the computational method" ;
    nt:hasRegex "[\\s\\S]{5,200}" .
  sub:zenodo-doi a nt:UriPlaceholder ;
    rdfs:label "Zenodo DOI URL" ;
    nt:hasPrefix "https://doi.org/" ;
    nt:hasPrefixLabel "DOI (starting with '10.')" ;
    nt:hasRegex "10.(\\d)+/(\\S)+" .
}

sub:provenance {
sub:assertion prov:wasAttributedTo orcid:0000-0002-1784-2920 .
}

sub:pubinfo {
  orcid:0000-0002-1784-2920 foaf:name "Anne Fouilloux" .
  this: dct:created "2025-08-14T09:20:40.780Z"^^xsd:dateTime ;
    dct:creator orcid:0000-0002-1784-2920 ;
    dct:license <https://creativecommons.org/licenses/by/4.0/> ;
    npx:supersedes <https://w3id.org/np/RAe0Hm2o4_8Uh9lIHJdTbp8PdnAkbMByoj1JlgMHLgNjk> ;
    npx:wasCreatedAt <https://nanodash.knowledgepixels.com/> ;
    rdfs:label "Template: Jupyter Notebook Computational Method" ;
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU> ;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw> , <https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw> , <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI> ;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RA5reLVXOCPQFWr2UiCJb19ES7NwOpQRmudb17e2iB0c4> .
  sub:sig npx:hasAlgorithm "RSA" ;
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQDWv2pJnmDsBOq8OlT1aSvYXSuWT34WOp4FYqEzdnn2F0kqzcFevBqWGZDxJWC0lqCrDEuNfp2QFyPe/+nES9dlHGYIhqPi68fwK6ZiNUotRFxXou+rjFznVvUxtCL8Ede79EBHwWN61QtwSIcU12bLoZsNPFlqQASQ93BJuKlihwIDAQAB" ;
    npx:hasSignature "MpCybM6Tazdg6y6oB9BWI2E/7CUFm4brjuR+2tx360nxdDtnUblNxTe7XnxVDSXg59px70moeQeHtSG9VPuF+yDfuf51hB5SKSzFQvmx9I2bIhBAn0b45QBjEtCm60GdDfmaOhqutKWOw6e0GLcRPFBF7083qrYlQ7oIrKBsvGE=" ;
    npx:hasSignatureTarget this: ;
    npx:signedBy orcid:0000-0002-1784-2920 .
}