[ { "@graph" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk", "@type" : [ "http://www.nanopub.org/nschema#Nanopublication" ], "http://www.nanopub.org/nschema#hasAssertion" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/pubinfo" } ] } ], "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/Head" }, { "@graph" : [ { "@id" : "http://purl.obolibrary.org/obo/RO_0002303", "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "has habitat" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/assertion", "@type" : [ "https://w3id.org/np/o/ntemplate/AssertionTemplate" ], "http://purl.org/dc/terms/description" : [ { "@value" : "

Such a nanopublication expresses an association between an organism instance and an environment, expressing that the given organism was observed in the specified type of environment.

" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "Expressing an association between an organism and an environment" } ], "https://w3id.org/np/o/ntemplate/hasDefaultProvenance" : [ { "@id" : "http://purl.org/np/RA2VjRiJ5AsNnPHDXuOqvsEJwTwqtj5rBb-OFkpPOzd9s" } ], "https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern" : [ { "@value" : "Organism of ${taxonname} - ${relation} - ${environment}" } ], "https://w3id.org/np/o/ntemplate/hasStatement" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st00" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st05" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st09" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st10" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st11" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st12" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st20" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st25" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st30" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st81" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st82" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st85" }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st90" } ], "https://w3id.org/np/o/ntemplate/hasTag" : [ { "@value" : "Biodiversity" } ], "https://w3id.org/np/o/ntemplate/hasTargetNanopubType" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/BiodivNanopub" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/association", "@type" : [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "this association" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/comment", "@type" : [ "https://w3id.org/np/o/ntemplate/LongLiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "short explanation related to the above statement" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/coordinates", "@type" : [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "lat/long coordinates in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5'" } ], "https://w3id.org/np/o/ntemplate/hasRegex" : [ { "@value" : "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/environment", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the environment to be associated with the organism" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://www.ebi.ac.uk/ols/api/select?ontology=envo&fieldList=iri,label,description&q=" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/lifecyclestage", "@type" : [ "https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "select the life cycle stage of the organism; leave blank if unknown" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFrom" : [ { "@id" : "http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/occurrence", "@type" : [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/organism", "@type" : [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the organism" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/organismAlt", "@type" : [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/relation", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the relation between the organism and the environment" } ], "https://w3id.org/np/o/ntemplate/possibleValue" : [ { "@id" : "http://purl.obolibrary.org/obo/RO_0002303" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { "@value" : "https://www.ebi.ac.uk/ols/api/select?ontology=ro&fieldList=iri,label,description&q=" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st00", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/OrganismToEnvironmentAssociation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/association" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st05", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/relation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/predicate" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/association" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st09", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/organism" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/subject" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/association" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st10", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/organism" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st11", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/taxonname" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasTaxonName" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/taxon" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st12", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/taxondef" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/taxon" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st20", "@type" : [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/lifecyclestage" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasLifeCycleStage" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/organism" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st25", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/occurrence" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasOccurrence" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/organism" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st30", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement", "https://w3id.org/np/o/ntemplate/RepeatableStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/organismAlt" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/2002/07/owl#sameAs" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/organism" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st81", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/coordinates" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/association" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st82", "@type" : [ "https://w3id.org/np/o/ntemplate/AdvancedStatement", "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/timepoint" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/timepoint" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/association" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st85", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/environment" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "https://w3id.org/biolink/vocab/object" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/association" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/st90", "@type" : [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#object" : [ { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/comment" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate" : [ { "@id" : "http://www.w3.org/2000/01/rdf-schema#comment" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject" : [ { "@id" : "https://w3id.org/np/o/ntemplate/ASSERTION" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/taxon", "@type" : [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "the taxon concept" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/taxondef", "@type" : [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "publication DOI (https://doi.org/...) or taxon treatment ID (https://treatment.plazi.org/id/...)" } ], "https://w3id.org/np/o/ntemplate/hasRegex" : [ { "@value" : "(https://doi.org/|https://treatment.plazi.org/id/).+" } ] }, { "@id" : "http://purl.org/np/RAZhLP7PiTBTSNhJlRRQT5xPkp___jXP_zC3_yQgkhKhk/taxonname", "@type" : [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@value" : "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi" : [ { 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