The SOAPdenovo2 case study is a reproducibility study aimed at exploring how existing data models and workflow enactment engines can help assess, record and preserve scientific workflows and associated findings by reviewing a comparison between sequence assembly algorithm performance in the light of development of the SOAPdenovo2 de novo genome assembler. The case study was a joint effort by the GigaScience journal, the Investigation/Study/Assay (ISA), Nanopublication (Nanopub) and Research Object (RO) communities and SOAPdenovo2 de novo genome assembler developers. See source: http://isa-tools.github.io/soapdenovo2/
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Raul Palma, Jun Zhao, Marco Roos, Maria Susana Avila-Garcia, Mark Thompson, Peter Li, Philippe Rocca-Serra, et al. "SOAPdenovo2 Case Study RO." ROHub. Aug 01 ,2014. https://w3id.org/ro-id/7b766778-d12f-45b3-bb71-ab4e95cbbc2c.
study publication status term accession number
The case study was a joint effort by the GigaScience journal, the Investigation/Study/Assay (ISA), Nanopublication (Nanopub) and Research Object (RO) communities and SOAPdenovo2 de novo genome assembler developers.
Investigation Publication Status Term Source REF ""
Conclusions: Benchmark using the Assemblathon1 and GAGE datasets showed that SOAPdenovo2 greatly surpasses its predecessor SOAPdenovo and is competitive to other assemblers on both assembly length and accuracy.
investigation publication status term source ref
Science and technology/Natural science/Biology/Genetics
Arts, culture and entertainment/Culture/Language
Arts, culture and entertainment/Culture/Library and museum
For more information, please visit: http://isa-tools.github.io/soapdenovo2/
GitHub repository for the SOAPdenovo2 case study.
Economy, business and finance/Economic sector/Computing and information technology/Software
See source: http://isa-tools.github.io/soapdenovo2/
SOAPdenovo2 Case Study RO. The SOAPdenovo2 case study is a reproducibility study aimed at exploring how existing data models and workflow enactment engines can help assess, record and preserve scientific workflows and associated findings by reviewing a comparison between sequence assembly algorithm performance in the light of development of the SOAPdenovo2 de novo genome assembler.
Science and technology/Natural science/Chemistry
Economy, business and finance/Economic sector/Computing and information technology/Wireless technology
repository for the SOAPdenovo2 case study
Science and technology/Social sciences/Anthropology