Galaxy CESM Tool Example
has assertion: assertion
has provenance: provenance
has publication info: pubinfo
type: Nanopublication
created: 2025-11-11T16:34:55.437+01:00
type: RoCrateNanopub

Applied sciences
type: DefinedTerm

Climatology
type: DefinedTerm

Source code of CESM
date created: 2022-06-12 19:28:28.652973+00:00
date modified: 2022-06-12 19:28:29.254776+00:00
description: This github repository contains all the versions of the Community Earth System Model (CESM).
license: no-permission
sd date published: 2022-06-12 19:28:28.652973+00:00
type: Resource
type: MediaObject
type: earth-scienceSWDocumentation

Reference height temperature plot
date created: 2022-06-12 19:46:58.117971+00:00
date modified: 2022-06-12 19:46:58.887727+00:00
description: Plot showing the reference height temperature (Kelvin) for 0001-02-01 00:00:00
license: no-permission
sd date published: 2022-06-12 19:46:58.117971+00:00
type: Sketch
type: Resource
type: MediaObject

cesm_log.txt
date created: 2022-06-12 19:42:13.540759+00:00
date modified: 2022-06-12 19:42:13.770339+00:00
license: no-permission
sd date published: 2022-06-12 19:42:13.540759+00:00
type: Resource
type: MediaObject
type: Report

inputdata_cesm_2.1.3_B1850_f19_g17.tar
date created: 2022-06-12 19:25:22.239580+00:00
date modified: 2022-06-12 19:25:22.759304+00:00
description: Tar file containing all the input datasets for running the Community Earth System Modelling in fully coupled mode B1850 f17_g19.
license: no-permission
sd date published: 2022-06-12 19:25:22.239580+00:00
type: Dataset
type: Resource
type: MediaObject

cpl_log.txt
date created: 2022-06-12 19:42:45.965215+00:00
date modified: 2022-06-12 19:42:46.257522+00:00
license: no-permission
sd date published: 2022-06-12 19:42:45.965215+00:00
type: Resource
type: MediaObject
type: Report

atm_log.txt
date created: 2022-06-12 19:40:57.754810+00:00
date modified: 2022-06-12 19:57:46.465986+00:00
description: Collection containing the logfile for the atmosphere compoment.
license: no-permission
sd date published: 2022-06-12 19:40:57.754810+00:00
type: Resource
type: MediaObject
type: Report

user_nl_cam_rs
date created: 2022-06-12 19:26:39.579207+00:00
date modified: 2022-06-12 19:53:19.325645+00:00
description: Customized user namelist for CAM restart (atmosphere component) to create history files and restart files at the end of the run.
license: no-permission
sd date published: 2022-06-12 19:26:39.579207+00:00
type: Dataset
type: Resource
type: MediaObject

b1850_f19_g17.cam.h0.0001-01.nc
date created: 2022-06-12 19:45:23.938693+00:00
date modified: 2022-06-12 19:45:24.454344+00:00
description: History file (1 month) for the atmosphere component (CAM).
license: no-permission
sd date published: 2022-06-12 19:45:23.938693+00:00
type: Dataset
type: Resource
type: MediaObject

rof_log.txt
date created: 2022-06-12 19:43:37.120543+00:00
date modified: 2022-06-12 19:43:37.816344+00:00
license: no-permission
sd date published: 2022-06-12 19:43:37.120543+00:00
type: Resource
type: MediaObject
type: Report

lnd_log.txt
date created: 2022-06-12 19:43:12.056705+00:00
date modified: 2022-06-12 19:43:12.739217+00:00
license: no-permission
sd date published: 2022-06-12 19:43:12.056705+00:00
type: Resource
type: MediaObject
type: Report

Galaxy history CESM B1850 f19_g17
date created: 2022-06-12 19:36:38.733653+00:00
date modified: 2022-06-12 19:36:39.225827+00:00
description: This Galaxy history contains all the inputs and generated outputs for this CESM example. If you have an account on Galaxy Europe (if not you can open one), you can import this history and reuse it.
license: no-permission
sd date published: 2022-06-12 19:36:38.733653+00:00
type: ExampleRun
type: Resource
type: MediaObject

University of Oslo
type: Organization
type: Agent

Nordic e-Infrastructure Collaboration
type: Organization
type: Agent

Galaxy Toolshed for CESM Galaxy Tool repository
date created: 2022-06-12 19:32:03.784559+00:00
date modified: 2022-06-12 19:56:01.321895+00:00
description: Link to the Galaxy Tool shed for CESM Galaxy Tool repository. This repository is useful whenever you want to install CESM Galaxy Tool in your own Galaxy instance. The version used in this example is revision: 7a7ba86e95a4
license: no-permission
sd date published: 2022-06-12 19:32:03.784559+00:00
type: Resource
type: MediaObject
type: SoftwareApplication

CESM galaxy Tool.
type: Phrase
norm score: 47.77662874870734
score: 46.2

examples of input dataset
type: Phrase
norm score: 17.063081695966908
score: 16.5

Einet Galaxy
type: Lemma
norm score: 9.428129829984544
score: 6.1

mechanics
type: Domain
norm score: 100.0
score: 3.6

space sciences (general)
type: NASA
norm score: 100.0
score: 0.14256678521633148

Wireless technology
type: IPTC
path: Economy, business and finance/Economic sector/Computing and information technology/Wireless technology

diagram
type: Concept
norm score: 13.793103448275863
score: 4.8

Galaxy CESM tool example
type: Phrase
norm score: 14.270941054808686
score: 13.8

dataset
type: Concept
norm score: 12.643678160919542
score: 4.4

space sciences
type: NASA
norm score: 100.0
score: 0.14256678521633148

abstraction
type: Concept
norm score: 16.091954022988507
score: 5.6

CWL abstract
type: Phrase
norm score: 17.269906928645295
score: 16.7

example
type: Lemma
norm score: 11.901081916537867
score: 7.7

galaxy Tool.
type: Phrase
norm score: 3.6194415718717683
score: 3.5

Research Object
type: Lemma
norm score: 15.610510046367851
score: 10.1

Galaxy CESM Tool Example.
type: Sentence
norm score: 10.51051051051051
score: 10.5

natural resources
type: Concept
norm score: 18.678160919540232
score: 6.5

B1850
type: Lemma
norm score: 18.856259659969087
score: 12.2

CESM
type: Lemma
norm score: 21.32921174652241
score: 13.8

https://w3id.org/ro-id/enrichment/9540ce30-32bb-462e-8edc-11dda40b5fe3
name: This Research Object aggregates all the resources needed for running a fully coupled CESM B1850 f19_g17 on Galaxy using the CESM Galaxy Tool. i) Examples of input datasets needed for running CESM B1850 f17_g19 on Galaxy; ii) Galaxy Workflow (.ga) and corresponding CWL abstract and diagram; iii) Link to a published Galaxy history.
type: Sentence
norm score: 89.48948948948949
score: 89.4

geology
type: FieldOfResearch
norm score: 100.0
score: 0.9624638557434082

earth sciences
type: FieldOfResearch
norm score: 100.0
score: 0.9624638557434082

Tool.
type: Lemma
norm score: 12.210200927357032
score: 7.9

IT-computer sciences
type: IPTC
path: Science and technology/Technology and engineering/IT-computer sciences

Einet Galaxy
type: Concept
norm score: 16.091954022988507
score: 5.6

example
type: Concept
norm score: 22.70114942528736
score: 7.9

Natural resources
type: IPTC
path: Environment/Natural resources

resource
type: Lemma
norm score: 10.664605873261205
score: 6.9

https://w3id.org/ro-id/f99a5c78-6e3d-44a6-a283-3a61e46e249b/#4d1cd6a7-c786-40d2-b1a5-b43b1de860e1
name: POLYGON ((-169.74610805511477 -81.23552390236422, -169.74610805511477 84.98081744706498, 192.94923305511477 84.98081744706498, 192.94923305511477 -81.23552390236422, -169.74610805511477 -81.23552390236422))
polygon: -169.74610805511477 -81.23552390236422, -169.74610805511477 84.98081744706498, 192.94923305511477 84.98081744706498, 192.94923305511477 -81.23552390236422, -169.74610805511477 -81.23552390236422
type: GeoShape

https://w3id.org/ro-id/f99a5c78-6e3d-44a6-a283-3a61e46e249b/#c9993a51-fef6-47de-bcaa-06d74e0e8697
name: POLYGON ((-169.74610805511477 -81.23552390236422, -169.74610805511477 84.98081744706498, 192.94923305511477 84.98081744706498, 192.94923305511477 -81.23552390236422, -169.74610805511477 -81.23552390236422))
type: Place

Galaxy CESM Tool Example
about: Applied sciences
about: Climatology
content size: 27937
copyright holder: University of Oslo
date created: 2022-06-12 19:11:26.901247+00:00
date modified: 2025-10-18 11:32:30.246000+00:00
date published: 2022-06-12 19:11:26.901247+00:00
description: This Research Object aggregates all the resources needed for running a fully coupled CESM B1850 f19_g17 on Galaxy using the CESM Galaxy Tool. i) Examples of input datasets needed for running CESM B1850 f17_g19 on Galaxy; ii) Galaxy Workflow (.ga) and corresponding CWL abstract and diagram; iii) Link to a published Galaxy history.
encoding format: application/ld+json
keywords: CESM
keywords: ESM
keywords: climate
keywords: climate-prediction
keywords: historical
license: no-permission
main entity: Workflow
publisher: Nordic e-Infrastructure Collaboration
creation mode: MANUAL
type: ResearchObject
type: LiveRO
type: Dataset
type: earth-scienceExecutableResearchObject
type: ExecutableResearchObject
cite-as: Anne Foilloux, and Jean Iaquinta. "Galaxy CESM Tool Example." ROHub. Jun 12 ,2022. https://w3id.org/ro-id/f99a5c78-6e3d-44a6-a283-3a61e46e249b.

https://w3id.org/ro-id/f99a5c78-6e3d-44a6-a283-3a61e46e249b/b8a72a9f-c63d-4507-9b79-fdf4d5c82dd4
as WKT: POLYGON ((-169.74610805511477 -81.23552390236422, -169.74610805511477 84.98081744706498, 192.94923305511477 84.98081744706498, 192.94923305511477 -81.23552390236422, -169.74610805511477 -81.23552390236422))
type: Geometry
type: Polygon

biblio
has part: CESM Documentation
type: Folder
type: Dataset

logfiles
description: Folder containing all the logfiles.
has part: cesm_log.txt
has part: cpl_log.txt
has part: atm_log.txt
has part: rof_log.txt
has part: lnd_log.txt
type: Folder
type: Dataset

input
has part: inputdata_cesm_2.1.3_B1850_f19_g17.tar
has part: user_nl_cam_rs
type: Folder
type: Dataset

tool
has part: Source code of CESM
has part: Galaxy history CESM B1850 f19_g17
has part: Galaxy Toolshed for CESM Galaxy Tool repository
has part: Galaxy Workflow for CESM Galaxy Tool
type: Folder
type: Dataset

output
has part: Reference height temperature plot
has part: b1850_f19_g17.cam.h0.0001-01.nc
has part: Abstract CWK figure for CESM Galaxy Tool
type: Folder
type: Dataset

Galaxy Workflow for CESM Galaxy Tool
date created: 2022-06-12 19:33:26.020345+00:00
date modified: 2022-06-12 19:55:11.697497+00:00
description: This is a link to Workflow Research Object stored in workflowhub.eu. It contains a Galaxy workflow (.ga), abstract CWL (.cwl) and diagram (.png).
license: no-permission
sd date published: 2022-06-12 19:33:26.020345+00:00
type: WorkflowDefinition
type: Resource
type: MediaObject

Abstract CWK figure for CESM Galaxy Tool
date created: 2022-06-12 19:16:41.044493+00:00
date modified: 2022-06-12 19:56:56.251936+00:00
description: Abstract CWL Automatically generated from the Galaxy workflow file: Workflow constructed from history CESM B1850 f19_g17
license: no-permission
sd date published: 2022-06-12 19:16:41.044493+00:00
type: Sketch
type: Resource
type: MediaObject

CESM Documentation
date created: 2022-06-12 19:21:08.294812+00:00
date modified: 2022-06-12 19:21:08.846263+00:00
description: General webpage where the documentation for the Community Earth System Model is available.
license: no-permission
sd date published: 2022-06-12 19:21:08.294812+00:00
type: Document
type: Resource
type: MediaObject

Anne Fouilloux
affiliation: Nordic e-Infrastructure Collaboration (NeIC)
type: Agent
orcid: 0000-0002-1784-2920

Jean Iaquinta
affiliation: UiO
type: Agent

admin NordicESMHub
type: Agent

service-account-enrichment
type: Agent

sig
has algorithm: RSA
signed by: RoCrateBot