[ { "@graph" : [ { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8", "@type" : [ "http://www.nanopub.org/nschema#Nanopublication" ], "http://www.nanopub.org/nschema#hasAssertion" : [ { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance" : [ { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo" : [ { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/pubinfo" } ] } ], "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/Head" }, { "@graph" : [ { "@id" : "http://purl.org/coloc-seq/method", "@type" : [ "http://edamontology.org/data_0957", "http://schema.org/Thing" ], "http://edamontology.org/has_function" : [ { "@id" : "http://edamontology.org/operation_3680" } ], "http://schema.org/applicationArea" : [ { "@language" : "en", "@value" : "Extracellular vesicle characterization" }, { "@language" : "en", "@value" : "Mitochondrial transcriptomics" }, { "@language" : "en", "@value" : "Organelle RNA localisation" } ], "http://schema.org/description" : [ { "@language" : "en", "@value" : "Controlled Level of Contamination coupled to deep sequencing - a novel subcellular transcriptomics approach" } ], "http://schema.org/name" : [ { "@language" : "en", "@value" : "CoLoC-seq" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Leverages classical enzymatic kinetics to track depletion dynamics of transcripts using RNase gradients" } ] }, { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8", "@type" : [ "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/o/ntemplate/AIDA-Sentence" ], "http://schema.org/about" : [ { "@id" : "https://doi.org/10.1093/nar/gkac1205" } ], "http://schema.org/text" : [ { "@language" : "en", "@value" : "CoLoC-seq is a novel subcellular transcriptomics approach that uses enzymatic kinetics to distinguish genuine organellar resident RNAs from surface-attached contaminants." } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "http://edamontology.org/operation_3680" } ] } ], "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/assertion" }, { "@graph" : [ { "@id" : "https://doi.org/10.1093/nar/gkac1205", "@type" : [ "http://purl.org/ontology/bibo/AcademicArticle", "http://schema.org/ScholarlyArticle" ], "http://purl.org/ontology/bibo/doi" : [ { "@value" : "10.1093/nar/gkac1205" } ], "http://schema.org/datePublished" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#gYear", "@value" : "2023" } ], "http://schema.org/isPartOf" : [ { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/__1" } ], "http://schema.org/name" : [ { "@language" : "en", "@value" : "CoLoC-seq probes the global topology of organelle transcriptomes" } ] }, { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/__1", "@type" : [ "http://schema.org/Periodical" ], "http://schema.org/issn" : [ { "@value" : "0305-1048" } ], "http://schema.org/name" : [ { "@language" : "en", "@value" : "Nucleic Acids Research" } ] }, { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/assertion", "http://www.w3.org/ns/prov#wasAttributedTo" : [ { "@id" : "https://orcid.org/0000-0001-8763-6703" }, { "@id" : "https://orcid.org/0000-0002-1481-2996" }, { "@id" : "https://orcid.org/0000-0002-9142-7979" } ], "http://www.w3.org/ns/prov#wasDerivedFrom" : [ { "@id" : "https://doi.org/10.1093/nar/gkac1205" } ] } ], "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/provenance" }, { "@graph" : [ { "@id" : "https://orcid.org/0009-0005-7752-8203", "http://xmlns.com/foaf/0.1/name" : [ { "@value" : "Tiado Kollender" } ] }, { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8", "@type" : [ "http://purl.org/nanopub/x/ExampleNanopub" ], "http://purl.org/dc/terms/created" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#dateTime", "@value" : "2026-01-11T00:00:00Z" } ], "http://purl.org/dc/terms/license" : [ { "@id" : "https://creativecommons.org/publicdomain/zero/1.0/" } ], "http://purl.org/nanopub/x/signedBy" : [ { "@id" : "https://orcid.org/0009-0005-7752-8203" } ], "http://purl.org/nanopub/x/wasCreatedFromPubinfoTemplate" : [ { "@id" : "https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw" }, { "@id" : "https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI" } ], "http://purl.org/pav/createdBy" : [ { "@id" : "https://orcid.org/0009-0005-7752-8203" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "AIDA-based assertion defining CoLoC-seq as a novel subcellular transcriptomics approach" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Nanopublication: CoLoC-seq core method definition" } ], "http://www.w3.org/ns/prov#wasAttributedTo" : [ { "@id" : "https://orcid.org/0009-0005-7752-8203" } ] }, { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/sig", "http://purl.org/nanopub/x/hasAlgorithm" : [ { "@value" : "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey" : [ { "@value" : "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAoSR/rqhnkTPQO8u4l2JQAemJo5cN83rT54nA5NXHUqaeu26bEjT/rsX1PCVBhhJ3cV2uu4wjI0NfcVaKPKmODSf6p579tdOykOnjbWLbxxPMe5DC5eV1ThMHsFsNU/6vCYIfS00E7wre7fnFYz7FAG7v1MZEyWeSXsHgk9jHoqQQDPqup5PHReKp1dd6J0Nht/OfSYnUancKAgIFyPhkTlThsLK5xSNyNEgiTR7pwkP5pGq2AnD6bPw4G3kiPnIpIGZNsaeIOvhn64gwbrtoJVdoun/namw6FQ7StEC5km/0evaBZc4qIextwO/s32Wru77ukblJ0Xi/YzbC0iLuIQIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature" : [ { "@value" : "nlQVR7h6putZiPWhdSKvWTbKQxNUYXYqD3Nu931hv28ziAo2Vko+rCA8JcSzAvjZ2pA5hlcy5h//+8zKr1+hPlMQVBqxa2QeeJJ7xhAPSrwZOG8aGw9ToT46cQFcT+CvFPW8StzFrQx4jJhtdTenMmtj6UUU9xZ1hxbLvrSjeFErEf2GWeT0rFzwVM2CEvvafP3w57pLd9cdxrrgXIeg2cgDn85ajm1yxbFRq/oRJvvG2p1MJVc3h2otd7A/LrY5F694sgv7cZ9behfeiWKJjblUbtq+9c3RoCKVtfwkNxfkdGGDu/Mf67HGvG+v2OhrY9BnPEC48Bn6Nr6jdZAXZA==" } ], "http://purl.org/nanopub/x/hasSignatureTarget" : [ { "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8" } ] } ], "@id" : "https://w3id.org/np/RAMVUimnATifJYJw0VP2zAesw4OK_Gw30p9NgcEU4oVW8/pubinfo" } ]