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All rights reserved. http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/dc/elements/1.1/title BEL Framework Large Corpus Document http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/pav/authoredBy http://www.tkuhn.ch/bel2nanopub/RAFps_b7SkQrOvaEp1XOxxmKQWq8Ob8NHONDaCvdbWG7I#_4 http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/pav/version 20131211 http://www.tkuhn.ch/bel2nanopub/RAFps_b7SkQrOvaEp1XOxxmKQWq8Ob8NHONDaCvdbWG7I#_3 http://www.w3.org/ns/prov#value TABLE 2. Comprehensive list of insulin signaling genes analyzed by microarray. from text - SAM analysis was performed on SC and OM samples separately using the same analysis parameters. With an estimated FDR of 0.5% and a minimum 3-fold change, 941 genes were identified as significantly different in OM tissue comparing IRO and ISO + NO. Using the same analysis parameters, no genes were identified as significantly different in SC tissue comparing IRO and ISO + NO. Using less stringent criteria (FDR = 15% and minimum 3-fold change), 534 genes were identified. When gene expression in OM tissue was compared directly with that in SC tissue, using paired analysis and the stringent parameters (0.5% FDR and minimum 3-fold difference), no genes were identified. Using less stringent criteria (FDR = 5% and minimum 2-fold change), only 48 significant genes were identified. 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