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All rights reserved. http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/dc/elements/1.1/title BEL Framework Large Corpus Document http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/pav/authoredBy http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#_4 http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/pav/version 20131211 http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#_3 http://www.w3.org/ns/prov#value Rapamycin has been shown to affect translation. We have utilized two complementary approaches to identify genes that are predominantly affected by rapamycin in Jurkat T cells. One was to compare levels of polysome-bound and total RNA using oligonucleotide microarrays complementary to 6,300 human genes. Another was to determine protein synthesis levels using two-dimensional PAGE. Analysis of expression changes at the polysome-bound RNA levels showed that translation of most of the expressed genes was partially reduced following rapamycin treatment. However, translation of 136 genes (6% of the expressed genes) was totally inhibited. This group included genes encoding RNA-binding proteins and several proteasome subunit members. Translation of a set of 159 genes (7%) was largely unaffected by rapamycin treatment. These genes included transcription factors, kinases, phosphatases, and members of the RAS superfamily. Analysis of [(35)S]methionine-labeled proteins from the same cell populations using two-dimensional PAGE showed that the integrated intensity of 111 of 830 protein spots changed in rapamycin-treated cells by at least 3-fold (70 increased, 41 decreased). We identified 22 affected protein spots representing protein products of 16 genes. The combined microarray and proteomic approach has uncovered novel genes affected by rapamycin that may be involved in its immunosuppressive effect and other genes that are not affected at the level of translation in a context of general inhibition of cap-dependent translation. http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#_3 http://www.w3.org/ns/prov#wasQuotedFrom http://www.ncbi.nlm.nih.gov/pubmed/11943782 http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#_4 http://www.w3.org/2000/01/rdf-schema#label Selventa http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#assertion http://www.w3.org/ns/prov#hadPrimarySource http://www.ncbi.nlm.nih.gov/pubmed/11943782 http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#assertion http://www.w3.org/ns/prov#wasDerivedFrom http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#assertion http://www.w3.org/ns/prov#wasDerivedFrom http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#_3 http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY#pubinfo http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY http://purl.org/dc/terms/created 2014-07-03T14:31:48.346+02:00 http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY http://purl.org/pav/createdBy http://orcid.org/0000-0001-6818-334X http://www.tkuhn.ch/bel2nanopub/RAD6XMGUjd1LcUyt2ROLYIBfszBpf3vQVw49kKzXwjnEY http://purl.org/pav/createdBy http://orcid.org/0000-0002-1267-0234