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All rights reserved. http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/dc/elements/1.1/title BEL Framework Large Corpus Document http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/pav/authoredBy http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#_5 http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://purl.org/pav/version 20131211 http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#_4 http://www.w3.org/ns/prov#value Thrombin-induced NAD(P)H oxidase regulated expression of another 22 genes that belong to various functional groups at the G1/S transition point (supplemental Table II). Then we compared the differences in gene expression profiles of cell types with functional and impaired NAD(P)H oxidase. Microarray data analyzed with multiclass SAM (2000 permutations and value of 0.245 corresponding to a FDR of 5.1%) identified 28 genes as most significantly differentially regulated (supplemental Figure IB) in response to thrombin treatment. Real-time RT-PCR analysis confirmed the transcriptional pattern of 22 of 28 genes identified using SAM (78.5%). Among these 22 genes, 11 were upregulated and 11 were downregulated. These genes fall into various functional groups: 5 genes encoded proteins involved in transcriptional regulation; 5 encoded signal transduction proteins; 5 encoded metabolic pathway proteins; 1 gene encoded electron and ion transport proteins; and another 6 encoded extracellular matrix and cytoskeletal proteins (supplemental Table II). http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#_4 http://www.w3.org/ns/prov#wasQuotedFrom http://www.ncbi.nlm.nih.gov/pubmed/16601225 http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#_5 http://www.w3.org/2000/01/rdf-schema#label Selventa http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#assertion http://www.w3.org/ns/prov#hadPrimarySource http://www.ncbi.nlm.nih.gov/pubmed/16601225 http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#assertion http://www.w3.org/ns/prov#wasDerivedFrom http://resource.belframework.org/belframework/20131211/knowledge/large_corpus.bel http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#assertion http://www.w3.org/ns/prov#wasDerivedFrom http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#_4 http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc#pubinfo http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc http://purl.org/dc/terms/created 2014-07-03T14:32:59.554+02:00 http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc http://purl.org/pav/createdBy http://orcid.org/0000-0001-6818-334X http://www.tkuhn.ch/bel2nanopub/RABnl-MNpHXKAZINZuzeAgmLQpUX1TijBYqg9WnTvISZc http://purl.org/pav/createdBy http://orcid.org/0000-0002-1267-0234