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The Planteome project brings an integrated approach of adopting common annotation standards and a set of reference ontologies for plants. The Planteome project is a heavily collaborative project that depends on coordination with several national and international projects. Existing and new collaborations are of following four types. 1)Development and enrichment of new and existing reference ontologies for plants. 2)Ontology use. Annotating the gene expression profiles and phenotypes in OMICs and Tree of Life projects and sharing the annotations with cROP data warehouse. 3)Ontology cross-references. Project collaborators will continue to use the ontologies developed as part of the Planteome initiatives as a reference vocabularies to map terms from similar vocabularies described or already in use by various plant databases and individual research projects - thereby creating a semantic web of ontologies required for plant biology. 4)Develop data annotation standards. Planteome project will engage in close collaboration with the various plant genome sequencing and annotation projects as well as with the comparative genomics databases such as Gramene, Interpro, Uniprot, EBI-ArrayExpress/ATLAS, PlantEnsembl, PLEXdb, DOE-KnowledgeBase, NSF-Phenotype-RCN, iPlant, etc.
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