EODIE Galaxy Tool Research Object showing its usage in Galaxy Europe
has assertion: assertion
has provenance: provenance
has publication info: pubinfo
type: Nanopublication
created: 2026-03-03T16:19:11.349+01:00
creator: RoCrateBot
type: RoCrateNanopub

Applied sciences
type: DefinedTerm

Earth observation
type: DefinedTerm

European Commission
doi: 10.13039/501100000781
type: Organization

Samantha Wittke
affiliation: CSC - IT Center for Science (Finland)
type: Agent
orcid: 0000-0002-9625-7235

University of Oslo
type: Organization
type: Agent

Finnish Geospatial Research Institute
type: Organization
type: Agent

EOSC-Nordic
title: EOSC-Nordic
type: Grant

EODIE Galaxy tool Research Object
type: Phrase
norm score: 65.85365853658536
score: 59.4

usage
type: Concept
norm score: 8.255159474671672
score: 4.4

Wireless technology
type: IPTC
path: Economy, business and finance/Economic sector/Computing and information technology/Wireless technology

Einet Galaxy
type: Concept
norm score: 35.27204502814259
score: 18.8

earth sciences
type: FieldOfResearch
norm score: 100.0
score: 0.8404794931411743

social and information sciences
type: NASA
norm score: 100.0
score: 0.30704838037490845

CWL abstract
type: Phrase
norm score: 7.206208425720621
score: 6.5

Research Object
type: Lemma
norm score: 22.36842105263158
score: 17.0

Galaxy Workflow
type: Lemma
norm score: 7.894736842105263
score: 6.0

resource
type: Lemma
norm score: 8.81578947368421
score: 6.7

Galaxy history
type: Phrase
norm score: 11.973392461197339
score: 10.8

dataset
type: Lemma
norm score: 8.026315789473685
score: 6.1

diagram
type: Concept
norm score: 7.317073170731708
score: 3.9

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/#198e9599-c38a-4405-b8a8-f919275a16c1
name: POLYGON ((24.18406744995054 61.18989752053165, 24.18674075775491 61.19037141598483, 24.18716156079448 61.18986424310414, 24.185956130552082 61.18912805997288, 24.18430110034565 61.188898431974906, 24.18406744995054 61.18989752053165))
type: Place

POLYGON ((24.18964452411491 61.191826100745374, 24.196058374024226 61.192475014763325, 24.196205529001745 61.19179482361619, 24.19026064542983 61.19107198695369, 24.18964452411491 61.191826100745374))
polygon: 24.18964452411491 61.191826100745374, 24.196058374024226 61.192475014763325, 24.196205529001745 61.19179482361619, 24.19026064542983 61.19107198695369, 24.18964452411491 61.191826100745374
type: GeoShape

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/#3bbf455c-fd1a-4145-aee5-895bfdcfc995
name: POLYGON ((22.811822629936163 60.294519011902665, 24.91411237826359 60.294519011902665, 24.91411237826359 61.32117938698947, 22.811822629936163 61.32117938698947, 22.811822629936163 60.294519011902665))
type: Place

POLYGON ((24.192215188374867 61.18501915071051, 24.19578893147163 61.186083237631095, 24.19715287272243 61.184061770037154, 24.19399282834134 61.18289474417407, 24.192215188374867 61.18501915071051))
type: Place

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/#bcf6b629-5aad-4f7e-9a87-b42eae2856c3
name: POLYGON ((24.18406744995054 61.18989752053165, 24.18674075775491 61.19037141598483, 24.18716156079448 61.18986424310414, 24.185956130552082 61.18912805997288, 24.18430110034565 61.188898431974906, 24.18406744995054 61.18989752053165))
polygon: 24.18406744995054 61.18989752053165, 24.18674075775491 61.19037141598483, 24.18716156079448 61.18986424310414, 24.185956130552082 61.18912805997288, 24.18430110034565 61.188898431974906, 24.18406744995054 61.18989752053165
type: GeoShape

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/#bffe49d7-7896-4bed-bf3a-52778fcdf167
name: POLYGON ((22.811822629936163 60.294519011902665, 24.91411237826359 60.294519011902665, 24.91411237826359 61.32117938698947, 22.811822629936163 61.32117938698947, 22.811822629936163 60.294519011902665))
polygon: 22.811822629936163 60.294519011902665, 24.91411237826359 60.294519011902665, 24.91411237826359 61.32117938698947, 22.811822629936163 61.32117938698947, 22.811822629936163 60.294519011902665
type: GeoShape

POLYGON ((24.18964452411491 61.191826100745374, 24.196058374024226 61.192475014763325, 24.196205529001745 61.19179482361619, 24.19026064542983 61.19107198695369, 24.18964452411491 61.191826100745374))
type: Place

POLYGON ((24.192215188374867 61.18501915071051, 24.19578893147163 61.186083237631095, 24.19715287272243 61.184061770037154, 24.19399282834134 61.18289474417407, 24.192215188374867 61.18501915071051))
polygon: 24.192215188374867 61.18501915071051, 24.19578893147163 61.186083237631095, 24.19715287272243 61.184061770037154, 24.19399282834134 61.18289474417407, 24.192215188374867 61.18501915071051
type: GeoShape

service-account-enrichment
type: Agent

EODIE Galaxy Tool Research Object showing its usage in Galaxy Europe
is finalized: False
is snapshot of: https://w3id.org/ro-id/1f27c890-61d1-447d-a9a0-4b55d2c2282b
snapshoted at time: 2022-03-12 15:16:04.842684+00:00
about: Applied sciences
about: Earth observation
content size: 242685
contributor: Samantha Wittke
copyright holder: Finnish Geospatial Research Institute
date created: 2022-03-11 10:09:34.280134+00:00
date modified: 2024-03-05 12:18:11.336331+00:00
date published: 2022-03-11 10:09:34.280134+00:00
description: This Research Object aggregates all the resources needed for running Galaxy EODIE: i) Examples of input datasets needed for running EODIE on Galaxy; ii) Galaxy Workflow (.ga) and corresponding CWL abstract and diagram; iii) Link to a published Galaxy history.
encoding format: application/ld+json
funding: EOSC-Nordic
keywords: copernicus
keywords: earth observation
keywords: galaxy
keywords: sentinel-2
license: no-permission
name: Galaxy EODIE Tool Example - snapshot
publisher: University of Oslo
publisher: Finnish Geospatial Research Institute
creation mode: MANUAL
golden: False
has geometry: https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/19e8c40b-3247-4262-beb1-023d73cd3ac0
has geometry: https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/26eb3f89-d160-4b0c-a5d9-e1da72c0cb68
has geometry: https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/38f18eb0-32db-4096-ab87-65d06506b13e
has geometry: https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/b2f4e417-3edc-4c7d-92e4-add7e54622f0
type: ResearchObject
type: SnapshotRO
type: Dataset
type: earth-scienceExecutableResearchObject
type: ExecutableResearchObject
domain: database
concept: usage
concept: Einet Galaxy
concept: diagram
concept: dataset
concept: tool
concept: abstraction
concept: input
concept: resource
field of research: earth sciences
field of research: geology
IPTC: Wireless technology
IPTC: IT-computer sciences
lemma: Research Object
lemma: Galaxy Workflow
lemma: resource
lemma: dataset
lemma: Einet Galaxy
lemma: Galaxy Europe
lemma: Galaxy EODIE
NASA: social and information sciences
NASA: documentation and information science
phrase: EODIE Galaxy tool Research Object
phrase: CWL abstract
phrase: Galaxy history
phrase: EODIE on Galaxy
phrase: input dataset
sentence: https://w3id.org/ro-id/9c67bd11-95f4-4308-ad6e-b2d7a8edb5f9
sentence: EODIE Galaxy Tool Research Object showing its usage in Galaxy Europe.
cite-as: Anne Foilloux, and Samantha Wittke. "EODIE Galaxy Tool Research Object showing its usage in Galaxy Europe." ROHub. Mar 11 ,2022. https://doi.org/10.24424/4fpx-ks69.

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/19e8c40b-3247-4262-beb1-023d73cd3ac0
as WKT: POLYGON ((24.18406744995054 61.18989752053165, 24.18674075775491 61.19037141598483, 24.18716156079448 61.18986424310414, 24.185956130552082 61.18912805997288, 24.18430110034565 61.188898431974906, 24.18406744995054 61.18989752053165))
type: Geometry
type: Polygon

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/26eb3f89-d160-4b0c-a5d9-e1da72c0cb68
as WKT: POLYGON ((22.811822629936163 60.294519011902665, 24.91411237826359 60.294519011902665, 24.91411237826359 61.32117938698947, 22.811822629936163 61.32117938698947, 22.811822629936163 60.294519011902665))
type: Geometry
type: Polygon

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/38f18eb0-32db-4096-ab87-65d06506b13e
as WKT: POLYGON ((24.192215188374867 61.18501915071051, 24.19578893147163 61.186083237631095, 24.19715287272243 61.184061770037154, 24.19399282834134 61.18289474417407, 24.192215188374867 61.18501915071051))
type: Geometry
type: Polygon

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/b2f4e417-3edc-4c7d-92e4-add7e54622f0
as WKT: POLYGON ((24.18964452411491 61.191826100745374, 24.196058374024226 61.192475014763325, 24.196205529001745 61.19179482361619, 24.19026064542983 61.19107198695369, 24.18964452411491 61.191826100745374))
type: Geometry
type: Polygon

biblio
type: Folder
type: Dataset

input
type: Folder
type: Dataset

tool
type: Folder
type: Dataset

output
type: Folder
type: Dataset

Jupyter Notebook to update Research Object and visualize area of interest
description: This Python Jupyter Notebook load this Research Object, update it e.g. add additional metadata information and fill its content. It also show the area of interest by visualizing the Sentinel-2 tile and the parccel shapefile where NDVI is calculated with EODIE Galaxy Tool.
type: Object
type: earth-scienceJupyterNotebook

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/08de5589-9377-4dad-b365-c7f6f3318a20
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 12:49:24.260353+00:00
date modified: 2022-03-12 15:15:47.216730+00:00
license: no-permission
name: https://climate.usegalaxy.eu/datasets/11ac94870d0bb33a7f87b4af1c86f136/display
sd date published: 2022-03-11 12:49:24.260353+00:00
type: Resource
type: MediaObject

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/27632d25-d050-4e8c-876b-2bb88931ac43
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 10:13:54.654033+00:00
date modified: 2022-03-12 15:15:46.885102+00:00
license: no-permission
name: https://eodie.readthedocs.io/en/latest/
sd date published: 2022-03-11 10:13:54.654033+00:00
type: Resource
type: MediaObject

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/3744e27f-90f4-4784-b18f-729dce7740dc
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 12:22:30.810417+00:00
date modified: 2022-03-12 15:15:50.426715+00:00
license: no-permission
name: https://doi.org/10.5281/zenodo.4762323
sd date published: 2022-03-11 12:22:30.810417+00:00
type: Resource
type: MediaObject

test_parcels_32635
description: This input dataset is a shapefile corresponding the the area of interest e.g. on which statistics such as NDVI will be computed.
type: Dataset
type: Object

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/4420b957-5476-4f64-9060-d4419f0cde2c
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 12:48:40.259848+00:00
date modified: 2022-03-12 15:15:47.399170+00:00
license: no-permission
name: https://climate.usegalaxy.eu/datasets/11ac94870d0bb33a35a2897d442f793e/display
sd date published: 2022-03-11 12:48:40.259848+00:00
type: Resource
type: MediaObject

Galaxy Workflow for EODIE Galaxy Tool
description: This is a link to Workflow Research Object stored in workflowhub.eu. It contains a Galaxy workflow (.ga), abstract CWL (.cwl) and diagram (.png).
type: Workflow
type: Object

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/4e764269-22b9-4e1e-8378-12ad79e68e18
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-12 14:23:32.995366+00:00
date modified: 2022-03-12 15:15:50.335647+00:00
license: no-permission
name: https://toolshed.g2.bx.psu.edu/view/climate/eodie/81b0ca76435d
sd date published: 2022-03-12 14:23:32.995366+00:00
type: Resource
type: MediaObject

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/613255a7-0ba6-474b-b5b0-92c3ce6d8df4
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 12:38:11.563886+00:00
date modified: 2022-03-12 15:15:50.537808+00:00
license: no-permission
name: https://workflowhub.eu/workflows/274
sd date published: 2022-03-11 12:38:11.563886+00:00
type: Resource
type: MediaObject

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/6b9c0f2e-8e7f-439f-9bc0-e3ddd894a8d4
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 12:56:45.981431+00:00
date modified: 2022-03-12 15:15:48.030119+00:00
license: no-permission
name: https://climate.usegalaxy.eu/datasets/11ac94870d0bb33a1d47bf13200d6d20/display
sd date published: 2022-03-11 12:56:45.981431+00:00
type: Resource
type: MediaObject

Abstract CWL figure for EODIE Galaxy Tool
description: Abstract CWL Automatically generated from the Galaxy workflow file: Workflow constructed from history 'EODIE Sentinel'
type: Sketch
type: Object

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/89b6cb09-483f-4010-a4b2-2d55e66a14df
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 12:47:07.047116+00:00
date modified: 2022-03-12 15:15:47.705381+00:00
license: no-permission
name: https://climate.usegalaxy.eu/datasets/11ac94870d0bb33a325d171940e10e66/display
sd date published: 2022-03-11 12:47:07.047116+00:00
type: Resource
type: MediaObject

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/98e5ef8a-ca33-4365-ac29-a51a89afb014
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 12:44:21.317999+00:00
date modified: 2022-03-12 15:15:48.334662+00:00
license: no-permission
name: https://workflowhub.eu/workflows/274/diagram
sd date published: 2022-03-11 12:44:21.317999+00:00
type: Resource
type: MediaObject

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/a97b7c95-0f29-45fb-bfdf-d272ebc0d642
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-11 12:54:38.554141+00:00
date modified: 2022-03-12 15:15:48.196664+00:00
license: no-permission
name: https://climate.usegalaxy.eu/datasets/11ac94870d0bb33a15a5227662283bd6/display
sd date published: 2022-03-11 12:54:38.554141+00:00
type: Resource
type: MediaObject

logfile
description: This output is the logfile generated when running EODIE Galaxy Tool over the specified geographical area (test_parcels_32635) and with the input Sentinel-2 dataset.
type: Dataset
type: Object

ndvi_20200626_34VFN_statistics.csv
description: This output dataset is a csv file containing NDVI values computed over the specific geographical area e.g. given by the input shapefile called 'test_parcels_32635'.
type: Dataset
type: Object

Source code of EODIE version 1.0.2 (zenodo)
doi: 10.5281/zenodo.4762323
description: Tarball containing the EODIE source code release 1.0.2 and its associated documentation.
type: Object
type: SoftwareSourceCode

sentinel2_tiles_world
description: This input dataset corresponds to the Sentinel-2 tile shapefile, originally provided by https://fromgistors.blogspot.com/2016/10/how-to-identify-sentinel-2-granule.html,
type: Dataset
type: Object

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/d2d82082-8107-464a-9932-7669b30c5a22
author: https://orcid.org/0000-0002-1784-2920
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-12 14:27:30.928413+00:00
date modified: 2022-03-12 15:15:48.697531+00:00
license: no-permission
name: https://usegalaxy.eu/u/annefou/h/eodie-sentinel-1
sd date published: 2022-03-12 14:27:30.928413+00:00
type: Resource
type: MediaObject

Galaxy Toolshed for EODIE Galaxy Tool repository
description: Link to the Galaxy Tool shed for EODIE Galaxy Tool repository. This repository is useful whenever you want to install EODIE Galaxy Tool in your own Galaxy instance. The version used in this example is revision: 0:81b0ca76435d
type: Object
type: SoftwareApplication

https://w3id.org/ro-id/7f907b0e-d08b-4d55-a272-7561564d8272/resources/ee26fe51-da94-4422-91f5-26e48472665f
description: Sentinel2 input data. This input dataset corresponds to the data itself while sentinel2_tiles_world would be the corresponding shapefile for the tile.
type: Dataset
type: Object

EODIE documentation
description: Online documentation of EODIE Toolkit.
type: Document
type: Object

Galaxy history EODIE Sentinel
description: This Galaxy history contains all the inputs and generated outputs for this EODIE example. If you have an account on Galaxy Europe (if not you can open one), you can import this history and reuse it.
type: ExampleRun
type: Object

RO-EODIE-Galaxy-history.ipynb
author: https://orcid.org/0000-0002-1784-2920
content size: 394610
creator: https://orcid.org/0000-0002-1784-2920
date created: 2022-03-12 15:14:03.275057+00:00
date modified: 2022-03-12 15:15:50.211920+00:00
license: no-permission
sd date published: 2022-03-12 15:14:03.275057+00:00
type: Resource
type: MediaObject

Einet Galaxy
type: Lemma
norm score: 25.394736842105264
score: 19.3

documentation and information science
type: NASA
norm score: 100.0
score: 0.30704838037490845

https://w3id.org/ro-id/9c67bd11-95f4-4308-ad6e-b2d7a8edb5f9
name: This Research Object aggregates all the resources needed for running Galaxy EODIE: i) Examples of input datasets needed for running EODIE on Galaxy; ii) Galaxy Workflow (ga) and corresponding CWL abstract and diagram; iii) Link to a published Galaxy history.
type: Sentence
norm score: 45.845845845845844
score: 45.8

Galaxy Europe
type: Lemma
norm score: 8.68421052631579
score: 6.6

dataset
type: Concept
norm score: 10.881801125703566
score: 5.8

IT-computer sciences
type: IPTC
path: Science and technology/Technology and engineering/IT-computer sciences

tool
type: Concept
norm score: 8.067542213883678
score: 4.3

abstraction
type: Concept
norm score: 9.568480300187616
score: 5.1

input
type: Concept
norm score: 8.630393996247655
score: 4.6

resource
type: Concept
norm score: 12.00750469043152
score: 6.4

geology
type: FieldOfResearch
norm score: 100.0
score: 0.8404794931411743

database
type: Domain
norm score: 100.0
score: 1.8

EODIE Galaxy Tool Research Object showing its usage in Galaxy Europe.
type: Sentence
norm score: 54.15415415415415
score: 54.1

EODIE on Galaxy
type: Phrase
norm score: 5.5432372505543235
score: 5.0

input dataset
type: Phrase
norm score: 9.42350332594235
score: 8.5

Galaxy EODIE
type: Lemma
norm score: 18.81578947368421
score: 14.3

Anne Fouilloux
affiliation: Nordic e-Infrastructure Collaboration (NeIC)
type: Agent
orcid: 0000-0002-1784-2920

sig
has algorithm: RSA
signed by: RoCrateBot